Bayesian Nonparametrics

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Format: Hardcover
Pub. Date: 2010-04-12
Publisher(s): Cambridge University Press
List Price: $110.25

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Summary

Bayesian nonparametrics works theoretically, computationally. The theory provides highly flexible models whose complexity grows appropriately with the amount of data. Computational issues, though challenging, are no longer intractable. All that is needed is an entry point: this intelligent book is the perfect guide to what can seem a forbidding landscape. Tutorial chapters by Ghosal, Lijoi and Pruuml;nster, Teh and Jordan, and Dunson advance from theory, to basic models and hierarchical modeling, to applications and implementation, particularly in computer science and biostatistics. These are complemented by companion chapters by the editors and Griffin and Quintana, providing additional models, examining computational issues, identifying future growth areas, and giving links to related topics. This coherent text gives ready access both to underlying principles and to state-of-the-art practice. Specific examples are drawn from information retrieval, NLP, machine vision, computational biology, biostatistics, and bioinformatics.

Author Biography

Nils Lid Hjort is Professor of Mathematical Statistics in the Department of Mathematics at the University of Oslo, Norway. Chris Holmes is Professor of Biostatistics in the Department of Statistics at the University of Oxford, Programme Leader in Statistical Genomics at MRC Harwell and member of the Oxford-Man Institute. Peter Mller is Professor in the Department of Biostatistics at the University of Texas M. D. Anderson Cancer Center. Stephen G. Walker is Professor of Statistics in the Institute of Mathematics, Statistics and Actuarial Science at the University of Kent, Canterbury.

Table of Contents

List of contributorsp. viii
An invitation to Bayesian nonparametricsp. 1
Bayesian nonparametric methods: motivation and ideasp. 22
Introductionp. 22
Bayesian choicesp. 24
Decision theoryp. 26
Asymptoticsp. 27
General posterior inferencep. 29
Discussionp. 33
Referencesp. 33
The Dirichlet process, related priors and posterior asymptoticsp. 35
Introductionp. 35
The Dirichlet processp. 36
Priors related to the Dirichlet processp. 46
Posterior consistencyp. 49
Convergence rates of posterior distributionsp. 60
Adaptation and model selectionp. 67
Bernshtein-von Mises theoremsp. 71
Concluding remarksp. 74
Referencesp. 76
Models beyond the Dirichlet processp. 80
Introductionp. 80
Models for survival analysisp. 86
General classes of discrete nonparametric priorsp. 99
Models for density estimationp. 114
Random meansp. 126
Concluding remarksp. 129
Referencesp. 130
Further models and applicationsp. 137
Beta processes for survival and event history modelsp. 137
Quantile inferencep. 144
Shape analysisp. 148
Time series with nonparametric correlation functionp. 150
Concluding remarksp. 152
Referencesp. 155
Hierarchical Bayesian nonparametric models with applicationsp. 158
Introductionp. 158
Hierarchical Dirichlet processesp. 160
Hidden Markov models with infinite state spacesp. 171
Hierarchical Pitman-Yor processesp. 177
The beta process and the Indian buffet processp. 184
Semiparametric modelsp. 193
Inference for hierarchical Bayesian nonparametric modelsp. 195
Discussionp. 202
Referencesp. 203
Computational issues arising in Bayesian nonparametric hierarchical modelsp. 208
Introductionp. 208
Construction of finite-dimensional measures on observablesp. 209
Recent advances in computation for Dirichlet process mixture modelsp. 211
Referencesp. 221
Nonparametric Bayes applications to biostatisticsp. 223
Introductionp. 223
Hierarchical modeling with Dirichlet process priorsp. 224
Nonparametric Bayes functional data analysisp. 236
Local borrowing of information and clusteringp. 245
Borrowing information across studies and centersp. 248
Flexible modeling of conditional distributionsp. 250
Bioinformaticsp. 260
Nonparametric hypothesis testingp. 265
Discussionp. 267
Referencesp. 268
More nonparametric Bayesian models for biostatisticsp. 274
Introductionp. 274
Random partitionsp. 275
Pólya treesp. 277
More DDP modelsp. 279
Other data formatsp. 283
An R package for nonparametric Bayesian inferencep. 286
Discussionp. 289
Referencesp. 290
Author indexp. 292
Subject indexp. 297
Table of Contents provided by Ingram. All Rights Reserved.

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